We love single cell analysis, and thankfully so do you and many other people. As cytometric analyses continue to grow in both complexity and nuance, we realized the need to 'open up' FlowJo to address the breadth of unique analyses, and help people share the fantastic tools they have developed in their lab while lowering the barrier to using algorithms and tying these tools together.
In the future, we will host and post plugins e.g. for clustering using your favorite algorithm (flowMeans and SPADE are already supported) and visualizations. You can expect to see a full exchange sometime in late 2015 with ratings and the ability to upload your own cool tools. We are working with several research groups at present to make this a reality and allows users access to a wide variety of advanced clustering and analysis tools - let us know what you think!